study_name	biological_context	source_type	gse	srr	species	dataset_id	publication_status	repository_accessions	platform	library_kit	cells	processing_status	current_release	assay_resolution	identity_source	processing_route
Human · Acute myeloid leukemia · splicing regulation (2025 Science Translational Medicine)	Long-read single-cell technical replicate series from AML	Clinical cohort	GSE292324	SRR32771574	human	GSE292324:human	Published		PacBio	3prime:v3	8104	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Acute myeloid leukemia · splicing regulation (2025 Science Translational Medicine)	Long-read single-cell technical replicate series from AML	Clinical cohort	GSE292324	SRR32771575	human	GSE292324:human	Published		PacBio	3prime:v3	8097	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Acute myeloid leukemia · splicing regulation (2025 Science Translational Medicine)	Long-read single-cell technical replicate series from AML	Clinical cohort	GSE292324	SRR32771576	human	GSE292324:human	Published		PacBio	3prime:v3	7371	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Acute myeloid leukemia · splicing regulation (2025 Science Translational Medicine)	Long-read single-cell technical replicate series from AML	Clinical cohort	GSE292324	SRR32771577	human	GSE292324:human	Published		PacBio	3prime:v3	7367	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Acute myeloid leukemia · splicing regulation (2025 Science Translational Medicine)	Long-read single-cell technical replicate series from AML	Clinical cohort	GSE292324	SRR32771578	human	GSE292324:human	Published		PacBio	3prime:v3	5187	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Acute myeloid leukemia · splicing regulation (2025 Science Translational Medicine)	Long-read single-cell technical replicate series from AML	Clinical cohort	GSE292324	SRR32771579	human	GSE292324:human	Published		PacBio	3prime:v3	7425	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Acute myeloid leukemia · splicing regulation (2025 Science Translational Medicine)	Long-read single-cell technical replicate series from AML	Clinical cohort	GSE292324	SRR32771580	human	GSE292324:human	Published		PacBio	3prime:v3	5195	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Acute myeloid leukemia · splicing regulation (2025 Science Translational Medicine)	Long-read single-cell technical replicate series from AML	Clinical cohort	GSE292324	SRR32771581	human	GSE292324:human	Published		PacBio	3prime:v3	6761	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639543	human	GSE276974:human	Published		ONT	3prime:v3	9352	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639544	human	GSE276974:human	Published		ONT	3prime:v3	9684	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639545	human	GSE276974:human	Published		ONT	3prime:v3	10232	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639546	human	GSE276974:human	Published		ONT	3prime:v3	8545	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639547	human	GSE276974:human	Published		ONT	3prime:v3	9182	done	False			
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639548	human	GSE276974:human	Published		ONT	3prime:v3	11620	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639549	human	GSE276974:human	Published		ONT	3prime:v3	6577	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639550	human	GSE276974:human	Published		ONT	3prime:v3	5705	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639551	human	GSE276974:human	Published		ONT	3prime:v3	6204	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639552	human	GSE276974:human	Published		ONT	3prime:v3	6453	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639553	human	GSE276974:human	Published		ONT	3prime:v3	6139	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639554	human	GSE276974:human	Published		ONT	3prime:v3	5916	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639555	human	GSE276974:human	Published		ONT	3prime:v3	6365	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639556	human	GSE276974:human	Published		ONT	3prime:v3	6130	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639557	human	GSE276974:human	Published		ONT	3prime:v3	6285	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · CCUS and healthy donors (GSE276974)	Bone-marrow mononuclear cells from CCUS patients and healthy donors	Clinical cohort	GSE276974	SRR30639558	human	GSE276974:human	Published		ONT	3prime:v3	12093	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267327	human	GSE307660:human	Published		ONT	3prime:v4	3190	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267328	human	GSE307660:human	Published		ONT	3prime:v4/v3	6900	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267329	human	GSE307660:human	Published		ONT	3prime:v4	4255	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267330	human	GSE307660:human	Published		ONT	3prime:v4	2280	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267331	human	GSE307660:human	Published		ONT	3prime:v4	2906	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267332	human	GSE307660:human	Published		ONT	3prime:v4/v3	3211	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267333	human	GSE307660:human	Published		ONT	3prime:v4	3932	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267334	human	GSE307660:human	Published		ONT	3prime:v4	4885	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267335	human	GSE307660:human	Published		ONT	3prime:v4/v3	2890	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267336	human	GSE307660:human	Published		ONT	3prime:v4/v3	1232	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267337	human	GSE307660:human	Published		ONT	3prime:v3	1005	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267338	human	GSE307660:human	Published		ONT	3prime:v4/v3	5339	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267339	human	GSE307660:human	Published		ONT	3prime:v4	8842	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267340	human	GSE307660:human	Published		ONT	3prime:v4	3075	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267341	human	GSE307660:human	Published		ONT	3prime:v4	3540	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267342	human	GSE307660:human	Published		ONT	3prime:v4	2481	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267343	human	GSE307660:human	Published		ONT	3prime:v4/v3	2287	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267344	human	GSE307660:human	Published		ONT	3prime:v4	4020	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Bone marrow · multiple myeloma and belantamab response (GSE307660)	Bone-marrow immune response to belantamab mafodotin	Clinical cohort	GSE307660	SRR35267345	human	GSE307660:human	Published		ONT	3prime:v4	2137	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · CAR T cells · signaling-domain shuffling (2022 Nature Communications)	Long-read profiling of engineered CAR T-cell constructs and states	Cell therapy	GSE214231	SRR21714350	human	GSE214231:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · CAR T cells · signaling-domain shuffling (2022 Nature Communications)	Long-read profiling of engineered CAR T-cell constructs and states	Cell therapy	GSE214231	SRR21714351	human	GSE214231:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · CAR T cells · signaling-domain shuffling (2022 Nature Communications)	Long-read profiling of engineered CAR T-cell constructs and states	Cell therapy	GSE214231	SRR21714352	human	GSE214231:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · CAR T cells · signaling-domain shuffling (2022 Nature Communications)	Long-read profiling of engineered CAR T-cell constructs and states	Cell therapy	GSE214231	SRR21714353	human	GSE214231:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · CAR T cells · signaling-domain shuffling (2022 Nature Communications)	Long-read profiling of engineered CAR T-cell constructs and states	Cell therapy	GSE214231	SRR21714354	human	GSE214231:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · CAR T cells · signaling-domain shuffling (2022 Nature Communications)	Long-read profiling of engineered CAR T-cell constructs and states	Cell therapy	GSE214231	SRR21714355	human	GSE214231:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Cancer cell lines · cross-platform LongBench (GSE303762)	ONT and PacBio benchmark of multiple cancer cell lines	Cell-line benchmark	GSE303762	SRR30947478	human	GSE303762:human	Published		ONT	3prime:v3	66691	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Cancer cell lines · cross-platform LongBench (GSE303762)	ONT and PacBio benchmark of multiple cancer cell lines	Cell-line benchmark	GSE303762	SRR30947479	human	GSE303762:human	Published		ONT	3prime:v3	5109	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Cortical neurons · iPSC differentiation (GSE274249)	Long-read isoform profiles across cortical-layer neuronal differentiation	Differentiation	GSE274249	SRR30166096	human	GSE274249:human	Published		ONT	3prime:v3	8736	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Cortical neurons · iPSC differentiation (GSE274249)	Long-read isoform profiles across cortical-layer neuronal differentiation	Differentiation	GSE274249	SRR30166097	human	GSE274249:human	Published		ONT	3prime:v3	8776	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Cortical neurons · iPSC differentiation (GSE274249)	Long-read isoform profiles across cortical-layer neuronal differentiation	Differentiation	GSE274249	SRR30166098	human	GSE274249:human	Published		ONT	3prime:v3	8730	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Cortical neurons · iPSC differentiation (GSE274249)	Long-read isoform profiles across cortical-layer neuronal differentiation	Differentiation	GSE274249	SRR30166099	human	GSE274249:human	Published		ONT	3prime:v3	8731	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Fibroblasts · hematopoietic reprogramming (GSE283658)	Direct reprogramming trajectory toward hematopoietic stem cells	Reprogramming	GSE283658	SRR31632206	human	GSE283658:human	Published		ONT	3prime:v4	8963	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Fibroblasts · hematopoietic reprogramming (GSE283658)	Direct reprogramming trajectory toward hematopoietic stem cells	Reprogramming	GSE283658	SRR31632207	human	GSE283658:human	Published		ONT	3prime:v3	8656	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Fibroblasts · hematopoietic reprogramming (GSE283658)	Direct reprogramming trajectory toward hematopoietic stem cells	Reprogramming	GSE283658	SRR31632208	human	GSE283658:human	Published		ONT	3prime:v3	8574	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Fibroblasts · hematopoietic reprogramming (GSE283658)	Direct reprogramming trajectory toward hematopoietic stem cells	Reprogramming	GSE283658	SRR34899601	human	GSE283658:human	Published		ONT	3prime:v4	6269	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808726	human	GSE178175:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808727	human	GSE178175:human	Published		PacBio	3prime:v3	21	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808728	human	GSE178175:human	Published		PacBio	3prime:v3	907	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808729	human	GSE178175:human	Published		PacBio	3prime:v3	1611	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808730	human	GSE178175:human	Published		PacBio	3prime:v3	1321	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808732	human	GSE178175:human	Published		PacBio	3prime:v3	1232	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808733	human	GSE178175:human	Published		PacBio	3prime:v3	1137	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808735	human	GSE178175:human	Published		PacBio	3prime:v3	924	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808736	human	GSE178175:human	Published		PacBio	3prime:v3	10	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808737	human	GSE178175:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808738	human	GSE178175:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808739	human	GSE178175:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808740	human	GSE178175:human	Published		PacBio	3prime:v3	155	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808741	human	GSE178175:human	Published		PacBio	3prime:v3	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808742	human	GSE178175:human	Published		PacBio	3prime:v3	0	done	False			
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808743	human	GSE178175:human	Published		ONT	3prime:v3	7770	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808744	human	GSE178175:human	Published		ONT	3prime:v3	678	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808745	human	GSE178175:human	Published		ONT	3prime:v3	7879	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808746	human	GSE178175:human	Published		ONT	3prime:v3	7050	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR14808747	human	GSE178175:human	Published		ONT	3prime:v3	1153	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Frontal cortex · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the human frontal cortex	Tissue atlas	GSE178175	SRR17074937	human	GSE178175:human	Published		PacBio	3prime:v3	346	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · HeLa cells · TLDR-seq (2025 Nucleic Acids Research)	Full-length capped RNA profiling with and without polyadenylation	Method benchmark	GSE289428	SRR32322922	human	GSE289428:human	Published		ONT	n/a-bulk	1	done	False	bulk_library	sample_resolved_bulk	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · HeLa cells · TLDR-seq (2025 Nucleic Acids Research)	Full-length capped RNA profiling with and without polyadenylation	Method benchmark	GSE289428	SRR32322923	human	GSE289428:human	Published		ONT	n/a-bulk	1	done	False	bulk_library	sample_resolved_bulk	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · HeLa cells · TLDR-seq (2025 Nucleic Acids Research)	Full-length capped RNA profiling with and without polyadenylation	Method benchmark	GSE289428	SRR32322924	human	GSE289428:human	Published		ONT	n/a-bulk	1	done	False	bulk_library	sample_resolved_bulk	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154422	human	GSE288222:human	Published		ONT	3prime:v3	3727	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154423	human	GSE288222:human	Published		ONT	3prime:v3	4165	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154424	human	GSE288222:human	Published		ONT	3prime:v3	4002	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154425	human	GSE288222:human	Published		ONT	3prime:v3	7529	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154426	human	GSE288222:human	Published		ONT	3prime:v3	5916	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154427	human	GSE288222:human	Published		ONT	3prime:v3	5216	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154428	human	GSE288222:human	Published		ONT	3prime:v3	9532	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154429	human	GSE288222:human	Published		ONT	3prime:v3	9884	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154430	human	GSE288222:human	Published		ONT	3prime:v3	3905	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154431	human	GSE288222:human	Published		ONT	3prime:v3	5298	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR32154433	human	GSE288222:human	Published		ONT	multiome:v1	3000	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Heart · heart failure (2025 Circulation)	Single-cell splicing isoform atlas of adult healthy and failing hearts	Tissue atlas	GSE288222	SRR36251361	human	GSE288222:human	Published		ONT	3prime:v3	3612	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Jurkat cells · CRISPR perturbation (2025 Nature Communications)	Targeted and whole-transcriptome long-read CRISPR conditions	Perturbation	GSE295932	SRR33369385	human	GSE295932:human	Published		ONT	5prime:v2	2911	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Jurkat cells · CRISPR perturbation (2025 Nature Communications)	Targeted and whole-transcriptome long-read CRISPR conditions	Perturbation	GSE295932	SRR33369386	human	GSE295932:human	Published		ONT	5prime:v2	5362	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Jurkat cells · CRISPR perturbation (2025 Nature Communications)	Targeted and whole-transcriptome long-read CRISPR conditions	Perturbation	GSE295932	SRR33369387	human	GSE295932:human	Published		ONT	5prime:v2	5968	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Jurkat cells · CRISPR perturbation (2025 Nature Communications)	Targeted and whole-transcriptome long-read CRISPR conditions	Perturbation	GSE295932	SRR33369388	human	GSE295932:human	Published		ONT	5prime:v2	7382	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Lung cancer cell-line mixture · 20% mixture (2023 NAR Genomics and Bioinformatics)	Mixture of H2228, H1975, A549, H838 and HCC827 cells	Cell-line benchmark	GSE224045	SRR23271781	human	GSE224045:human	Published		ONT	multiome:v1	8756	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Lymph node B cells · CaClust K6B (2024 Genome Biology)	Targeted genotype-to-transcript profiling in follicular lymphoma	Clinical cohort	GSE252416	SRR27406895	human	GSE252416:human	Published		PacBio	5prime:v2	0	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Lymph node B cells · CaClust K7B (2024 Genome Biology)	Targeted single-cell transcript resequencing in follicular lymphoma	Clinical cohort	GSE252344	SRR27405402	human	GSE252344:human	Published		PacBio	5prime:v2	45	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Ovarian cancer cell-line mixture · Isosceles benchmark (2024 Nature Communications)	PromethION mixture of IGROV1, SK-OV-3 and COV504 cells	Cell-line benchmark	GSE248118	SRR26865982	human	GSE248118:human	Published		ONT	3prime:v3	2331	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Ovary · age groups	Long-read ovarian transcriptomes across age groups	Tissue dataset	benagen_human_ovary	A1	human	benagen_human_ovary:human	Unpublished		ONT	3prime:v3	12650	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Ovary · age groups	Long-read ovarian transcriptomes across age groups	Tissue dataset	benagen_human_ovary	Y1	human	benagen_human_ovary:human	Unpublished		ONT	3prime:v3	16271	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Ovary · age groups	Long-read ovarian transcriptomes across age groups	Tissue dataset	benagen_human_ovary	benagen_ovary_Young2_ONT	human	benagen_human_ovary:human	Unpublished		ONT	10x-fulllength	16576	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Pediatric glioma · NRCAM microexon skipping (2025 Cell Reports)	High-grade glioma cells with curated malignant-state annotations	Tumor atlas	GSE301658	SRR34364189	human	GSE301658:human	Published		ONT	multiome:v1	3831	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Prostate cancer cells · FOXA2 perturbation (2025 Nature Genetics)	Lineage-plasticity model profiled by single-cell Nanopore RNA sequencing	Cancer cell line	GSE289790	SRR32370261	human	GSE289790:human	Published		ONT	3prime:v3	2030	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Prostate cancer cells · FOXA2 perturbation (2025 Nature Genetics)	Lineage-plasticity model profiled by single-cell Nanopore RNA sequencing	Cancer cell line	GSE289790	SRR32370262	human	GSE289790:human	Published		ONT	3prime:v3	1985	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Tumors and cancer cell lines · scNanoGPS (2023 Nature Communications)	Melanoma and renal-cell carcinoma nuclei plus A375 and H2030 cell lines	Tumor and cell-line atlas	GSE212945	SRR21492154	human	GSE212945:human	Published		ONT	multiome:v1	6603	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Tumors and cancer cell lines · scNanoGPS (2023 Nature Communications)	Melanoma and renal-cell carcinoma nuclei plus A375 and H2030 cell lines	Tumor and cell-line atlas	GSE212945	SRR21492155	human	GSE212945:human	Published		ONT	multiome:v1	8429	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Tumors and cancer cell lines · scNanoGPS (2023 Nature Communications)	Melanoma and renal-cell carcinoma nuclei plus A375 and H2030 cell lines	Tumor and cell-line atlas	GSE212945	SRR21492156	human	GSE212945:human	Published		ONT	multiome:v1	3690	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Tumors and cancer cell lines · scNanoGPS (2023 Nature Communications)	Melanoma and renal-cell carcinoma nuclei plus A375 and H2030 cell lines	Tumor and cell-line atlas	GSE212945	SRR21492157	human	GSE212945:human	Published		ONT	multiome:v1	3587	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Tumors and cancer cell lines · scNanoGPS (2023 Nature Communications)	Melanoma and renal-cell carcinoma nuclei plus A375 and H2030 cell lines	Tumor and cell-line atlas	GSE212945	SRR34318914	human	GSE212945:human	Published		ONT	multiome:v1	3672	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · Tumors and cancer cell lines · scNanoGPS (2023 Nature Communications)	Melanoma and renal-cell carcinoma nuclei plus A375 and H2030 cell lines	Tumor and cell-line atlas	GSE212945	SRR34318915	human	GSE212945:human	Published		ONT	multiome:v1	4059	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · iNeurons · Neurabin-I perturbation (GSE283629)	Synaptic-development model with molecular rescue conditions	Differentiation	GSE283629	SRR31435216	human	GSE283629:human	Published		ONT	3prime:v3	17097	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · iNeurons · Neurabin-I perturbation (GSE283629)	Synaptic-development model with molecular rescue conditions	Differentiation	GSE283629	SRR31435217	human	GSE283629:human	Published		ONT	3prime:v3	17171	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · iNeurons · Neurabin-I perturbation (GSE283629)	Synaptic-development model with molecular rescue conditions	Differentiation	GSE283629	SRR31435218	human	GSE283629:human	Published		ONT	3prime:v3	20205	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Human · iNeurons · Neurabin-I perturbation (GSE283629)	Synaptic-development model with molecular rescue conditions	Differentiation	GSE283629	SRR31435219	human	GSE283629:human	Published		ONT	3prime:v3	20067	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE v44 (Ensembl 110) on GRCh38, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586147	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586148	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586149	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586150	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586151	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586152	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586153	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586154	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586155	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586156	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586157	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586158	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586159	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586160	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586161	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586162	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586163	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586164	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586165	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586166	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586167	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586168	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586169	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586170	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586171	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586172	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586173	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586174	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586175	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586176	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586177	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586178	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586179	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586180	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586181	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586182	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586183	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586184	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586185	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586186	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586187	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586188	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586189	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586190	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586191	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586192	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586193	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586194	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586195	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586197	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586198	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586199	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586200	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586201	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586202	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586203	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586204	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586205	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586206	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586207	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586208	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586209	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586210	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586211	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586212	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586213	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586215	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586217	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586218	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586219	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586220	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586222	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586223	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586225	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586227	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586228	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586229	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586230	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586231	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586232	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586233	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586234	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586235	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586236	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586237	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586238	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586239	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586240	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586241	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586242	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586243	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586244	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586245	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586246	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586247	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586248	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586249	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586250	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586251	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586252	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586253	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586254	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586255	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586256	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586257	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586258	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586259	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586260	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586261	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586263	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586264	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586265	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586266	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586267	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586268	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586269	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586270	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586271	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586272	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586274	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586275	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586276	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586277	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586278	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586279	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586280	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586281	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586282	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586283	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586284	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586285	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586286	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586287	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586288	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586289	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586290	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586291	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586292	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586293	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586294	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586295	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586296	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586297	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586298	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586299	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586300	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586301	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586302	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586303	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586304	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586305	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586306	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586307	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586308	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586309	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586310	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586311	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586312	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586313	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586314	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586315	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586316	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586317	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586318	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586319	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586320	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586321	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586323	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586324	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586325	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586326	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586327	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586328	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586329	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586330	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586331	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586332	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586333	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586334	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586335	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586336	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586337	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586338	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586339	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586340	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586341	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586342	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586343	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586344	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586345	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586346	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586347	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586348	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586349	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586350	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586351	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586352	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586353	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586354	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586355	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586356	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586357	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586358	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586359	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586360	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586361	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586362	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586363	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586364	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586365	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586366	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM and yolk sac · hematopoietic transitions (2025 Nature Cardiovascular Research)	Embryonic endothelial-to-hematopoietic states in AGM and yolk sac	Developmental atlas	GSE309071	SRR35586367	mouse	GSE309071:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248566	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248568	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248569	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248570	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248571	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248573	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248574	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248575	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248576	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248577	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248578	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248579	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248581	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248582	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248583	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248584	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248585	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248586	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248587	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248588	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248589	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248590	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248591	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248592	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248593	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248594	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248595	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248596	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248597	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248598	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248599	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248601	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248602	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248603	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248606	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248607	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248608	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248609	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248610	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248611	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248612	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · AGM · hematopoietic stem cell emergence (2022 Science Advances)	Arterial and hemogenic endothelial cells during embryonic hematopoiesis	Developmental atlas	GSE185554	SRR16248613	mouse	GSE185554:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryo · E6.5–E8.5 reciprocal crosses	Forward and reciprocal C57BL/6J–DBA/2J crosses across gastrulation	Developmental atlas	OWN_ASE_scONT	E6.5	mouse	OWN_ASE_scONT:mouse	Unpublished	CRA044500	ONT	3prime:v3	8908	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryo · E6.5–E8.5 reciprocal crosses	Forward and reciprocal C57BL/6J–DBA/2J crosses across gastrulation	Developmental atlas	OWN_ASE_scONT	E7.5	mouse	OWN_ASE_scONT:mouse	Unpublished	CRA044500	ONT	3prime:v3	8125	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryo · E6.5–E8.5 reciprocal crosses	Forward and reciprocal C57BL/6J–DBA/2J crosses across gastrulation	Developmental atlas	OWN_ASE_scONT	E8.5	mouse	OWN_ASE_scONT:mouse	Unpublished	CRA044500	ONT	3prime:v3	10363	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryo · E6.5–E8.5 reciprocal crosses	Forward and reciprocal C57BL/6J–DBA/2J crosses across gastrulation	Developmental atlas	OWN_ASE_scONT	FJ_E6.5	mouse	OWN_ASE_scONT:mouse	Unpublished	CRA044500	ONT	3prime:v3	10000	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryo · E6.5–E8.5 reciprocal crosses	Forward and reciprocal C57BL/6J–DBA/2J crosses across gastrulation	Developmental atlas	OWN_ASE_scONT	FJ_E7.5	mouse	OWN_ASE_scONT:mouse	Unpublished	CRA044500	ONT	3prime:v3	13621	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryo · E6.5–E8.5 reciprocal crosses	Forward and reciprocal C57BL/6J–DBA/2J crosses across gastrulation	Developmental atlas	OWN_ASE_scONT	FJ_E8.5	mouse	OWN_ASE_scONT:mouse	Unpublished	CRA044500	ONT	3prime:v3	17400	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic brain · E18 (2020 Nature Communications)	Error-corrected Nanopore single-cell transcriptomes from the E18 brain	Developmental atlas	GSE130708	SRR9008425	mouse	GSE130708:mouse	Published		ONT	3prime:v2	177	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic brain · E18 (2020 Nature Communications)	Error-corrected Nanopore single-cell transcriptomes from the E18 brain	Developmental atlas	GSE130708	SRR9008427	mouse	GSE130708:mouse	Published		ONT	3prime:v2	827	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic brain · E18 (2020 Nature Communications)	Error-corrected Nanopore single-cell transcriptomes from the E18 brain	Developmental atlas	GSE130708	SRR9008428	mouse	GSE130708:mouse	Published		ONT	3prime:v2	896	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic brain · E18 (2020 Nature Communications)	Error-corrected Nanopore single-cell transcriptomes from the E18 brain	Developmental atlas	GSE130708	SRR9008429	mouse	GSE130708:mouse	Published		ONT	3prime:v2	922	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic brain · E18 (2020 Nature Communications)	Error-corrected Nanopore single-cell transcriptomes from the E18 brain	Developmental atlas	GSE130708	SRR9008431	mouse	GSE130708:mouse	Published		ONT	3prime:v2	917	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic brain · E18 (2020 Nature Communications)	Error-corrected Nanopore single-cell transcriptomes from the E18 brain	Developmental atlas	GSE130708	SRR9008433	mouse	GSE130708:mouse	Published		ONT	3prime:v2	905	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209150	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209151	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209152	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209153	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209154	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209155	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209156	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209158	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209159	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209160	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209162	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209163	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209164	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209165	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209166	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209167	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209169	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209170	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209171	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209172	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209173	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209174	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209175	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Embryonic endothelium · hematopoietic transition (2025 Nature Cardiovascular Research)	Individually indexed cells spanning endothelial-to-hematopoietic transitions	Developmental atlas	GSE274527	SRR30209176	mouse	GSE274527:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Hippocampus · RPS2-STAMP translation profiling (2026 Nature)	Isoform-specific single-cell translational profiling of the mouse hippocampus	Brain and translation	GSE314176	SRR36480452	mouse	GSE314176:mouse	Published		PacBio	3prime:v3	14400	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Hippocampus · RPS2-STAMP translation profiling (2026 Nature)	Isoform-specific single-cell translational profiling of the mouse hippocampus	Brain and translation	GSE314176	SRR36480453	mouse	GSE314176:mouse	Published		PacBio	3prime:v3	12730	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Hippocampus · RPS2-STAMP translation profiling (2026 Nature)	Isoform-specific single-cell translational profiling of the mouse hippocampus	Brain and translation	GSE314176	SRR36480454	mouse	GSE314176:mouse	Published		PacBio	3prime:v3	4094	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Hippocampus · single-nucleus isoform sequencing (2022 Nature Biotechnology)	Single-nucleus isoform sequencing of the mouse hippocampus	Tissue atlas	GSE178175	SRR17074938	mouse	GSE178175:mouse	Published		ONT	3prime:v3	5117	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224853	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224854	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224855	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224856	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224857	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224858	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224859	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224860	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224861	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224862	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224863	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Oligodendrocyte lineage · maturation (2017 BMC Genomics)	Oligodendrocyte progenitors and maturing oligodendrocytes	Brain cell atlas	GSE76026	SRR3224864	mouse	GSE76026:mouse	Published		PacBio	n/a-bulk	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	PacBio PacBio CCS (confirmed by FASTQ inspection on September 8) -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Outer hair cells (2019 Cell Reports)	Single-cell Nanopore sequencing of cochlear outer hair cells	Inner ear	GSE114157	SRR7173239	mouse	GSE114157:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Outer hair cells (2019 Cell Reports)	Single-cell Nanopore sequencing of cochlear outer hair cells	Inner ear	GSE114157	SRR7173240	mouse	GSE114157:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Outer hair cells (2019 Cell Reports)	Single-cell Nanopore sequencing of cochlear outer hair cells	Inner ear	GSE114157	SRR7173241	mouse	GSE114157:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Outer hair cells (2019 Cell Reports)	Single-cell Nanopore sequencing of cochlear outer hair cells	Inner ear	GSE114157	SRR7173242	mouse	GSE114157:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Outer hair cells (2019 Cell Reports)	Single-cell Nanopore sequencing of cochlear outer hair cells	Inner ear	GSE114157	SRR7173246	mouse	GSE114157:mouse	Published		ONT	n/a	1	done	False	cell_resolved_per_file_library	sample_resolved_single_cell	ONT ONT cDNA reads -> IsoQuant (read_group file_name; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Pancreatic islets · insulin-depleted protocols (2026 Diabetes)	Long-read islet transcriptomes with insulin depletion and 3′/5′ capture	Tissue and method	GSE295353	SRR33259246	mouse	GSE295353:mouse	Published		ONT	n/a	26635	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Pancreatic islets · insulin-depleted protocols (2026 Diabetes)	Long-read islet transcriptomes with insulin depletion and 3′/5′ capture	Tissue and method	GSE295353	SRR33259247	mouse	GSE295353:mouse	Published		ONT	5prime:v2	45303	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Pancreatic islets · insulin-depleted protocols (2026 Diabetes)	Long-read islet transcriptomes with insulin depletion and 3′/5′ capture	Tissue and method	GSE295353	SRR33259248	mouse	GSE295353:mouse	Published		ONT	3prime:v3	19480	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Pancreatic islets · insulin-depleted protocols (2026 Diabetes)	Long-read islet transcriptomes with insulin depletion and 3′/5′ capture	Tissue and method	GSE295353	SRR35432458	mouse	GSE295353:mouse	Published		ONT	n/a	6398	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Pancreatic islets · insulin-depleted protocols (2026 Diabetes)	Long-read islet transcriptomes with insulin depletion and 3′/5′ capture	Tissue and method	GSE295353	SRR35432459	mouse	GSE295353:mouse	Published		ONT	n/a	9513	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Pancreatic islets · insulin-depleted protocols (2026 Diabetes)	Long-read islet transcriptomes with insulin depletion and 3′/5′ capture	Tissue and method	GSE295353	SRR35432460	mouse	GSE295353:mouse	Published		ONT	3prime:v3	3002	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Postnatal brain · hippocampus and prefrontal cortex (2021 Nature Communications)	Brain-region- and cell-type-specific isoform usage during postnatal development	Tissue atlas	GSE158450	SRR12699083	mouse	GSE158450:mouse	Published		PacBio	10x-3prime-v2	7286	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Postnatal brain · hippocampus and prefrontal cortex (2021 Nature Communications)	Brain-region- and cell-type-specific isoform usage during postnatal development	Tissue atlas	GSE158450	SRR12699084	mouse	GSE158450:mouse	Published		PacBio	10x-3prime-v2	5273	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Postnatal brain · hippocampus and prefrontal cortex (2021 Nature Communications)	Brain-region- and cell-type-specific isoform usage during postnatal development	Tissue atlas	GSE158450	SRR12699085	mouse	GSE158450:mouse	Published		PacBio	10x-3prime-v2	3146	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Postnatal brain · hippocampus and prefrontal cortex (2021 Nature Communications)	Brain-region- and cell-type-specific isoform usage during postnatal development	Tissue atlas	GSE158450	SRR12699086	mouse	GSE158450:mouse	Published		PacBio	10x-3prime-v2	2474	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Postnatal brain · hippocampus and prefrontal cortex (2021 Nature Communications)	Brain-region- and cell-type-specific isoform usage during postnatal development	Tissue atlas	GSE158450	SRR12699089	mouse	GSE158450:mouse	Published		ONT	visium:v1		done	True			
Mouse · Preimplantation embryos · isoform switching (2024 PLOS Biology)	HIT-scISOseq profiling across preimplantation development	Developmental atlas	GSE250381	SRR27237241	mouse	GSE250381:mouse	Published		PacBio	10x:chemistry_unknown	16	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Preimplantation embryos · isoform switching (2024 PLOS Biology)	HIT-scISOseq profiling across preimplantation development	Developmental atlas	GSE250381	SRR27237242	mouse	GSE250381:mouse	Published		PacBio	10x:chemistry_unknown	77	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Preimplantation embryos · isoform switching (2024 PLOS Biology)	HIT-scISOseq profiling across preimplantation development	Developmental atlas	GSE250381	SRR27237243	mouse	GSE250381:mouse	Published		PacBio	10x:chemistry_unknown	86	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Preimplantation embryos · isoform switching (2024 PLOS Biology)	HIT-scISOseq profiling across preimplantation development	Developmental atlas	GSE250381	SRR27237244	mouse	GSE250381:mouse	Published		PacBio	10x:chemistry_unknown	50	done	False	cell_resolved_droplet	barcode_resolved	PacBio PacBio consensus reads (supported by model and source records; per-file read type still requires verification) -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Retina · short- and long-read integration (2025 Genome Research)	Retina and retinal ganglion cell isoform transcriptomes	Tissue atlas	GSE255520	SRR27935476	mouse	GSE255520:mouse	Published		ONT	3prime:v2	15499	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Retina · short- and long-read integration (2025 Genome Research)	Retina and retinal ganglion cell isoform transcriptomes	Tissue atlas	GSE255520	SRR27935477	mouse	GSE255520:mouse	Published		ONT	3prime:v3	6398	done	True	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Retina · short- and long-read integration (2025 Genome Research)	Retina and retinal ganglion cell isoform transcriptomes	Tissue atlas	GSE255520	SRR27935479	mouse	GSE255520:mouse	Published		ONT	3prime:v3	11509	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Spleen T cells · adult/old age comparison (GSE214390)	Mouse arm of a PacBio long-read anti-CD3-sorted spleen T-cell age comparison; no processed cell map is available in the current rolling registry	Cross-species T-cell study	GSE214390	SRR21742653	mouse	GSE214390:mouse	Published		PacBio	3prime:v3	0	done	False			
Mouse · Spleen T cells · adult/old age comparison (GSE214390)	Mouse arm of a PacBio long-read anti-CD3-sorted spleen T-cell age comparison; no processed cell map is available in the current rolling registry	Cross-species T-cell study	GSE214390	SRR21742654	mouse	GSE214390:mouse	Published		PacBio	3prime:v3	0	done	False			
Mouse · Spleen T cells · adult/old age comparison (GSE214390)	Mouse arm of a PacBio long-read anti-CD3-sorted spleen T-cell age comparison; no processed cell map is available in the current rolling registry	Cross-species T-cell study	GSE214390	SRR21742655	mouse	GSE214390:mouse	Published		PacBio	3prime:v3	0	done	False			
Mouse · Spleen T cells · adult/old age comparison (GSE214390)	Mouse arm of a PacBio long-read anti-CD3-sorted spleen T-cell age comparison; no processed cell map is available in the current rolling registry	Cross-species T-cell study	GSE214390	SRR21742656	mouse	GSE214390:mouse	Published		PacBio	3prime:v3	0	done	False			
Mouse · Spleen T cells · adult/old age comparison (GSE214390)	Mouse arm of a PacBio long-read anti-CD3-sorted spleen T-cell age comparison; no processed cell map is available in the current rolling registry	Cross-species T-cell study	GSE214390	SRR21742657	mouse	GSE214390:mouse	Published		PacBio	3prime:v3	0	done	False			
Mouse · Spleen T cells · adult/old age comparison (GSE214390)	Mouse arm of a PacBio long-read anti-CD3-sorted spleen T-cell age comparison; no processed cell map is available in the current rolling registry	Cross-species T-cell study	GSE214390	SRR21742658	mouse	GSE214390:mouse	Published		PacBio	3prime:v3	0	done	False			
Mouse · Spleen T cells · adult/old age comparison (GSE214390)	Mouse arm of a PacBio long-read anti-CD3-sorted spleen T-cell age comparison; no processed cell map is available in the current rolling registry	Cross-species T-cell study	GSE214390	SRR21742659	mouse	GSE214390:mouse	Published		PacBio	3prime:v3	0	done	False			
Mouse · Spleen T cells · adult/old age comparison (GSE214390)	Mouse arm of a PacBio long-read anti-CD3-sorted spleen T-cell age comparison; no processed cell map is available in the current rolling registry	Cross-species T-cell study	GSE214390	SRR21742660	mouse	GSE214390:mouse	Published		PacBio	3prime:v3	0	done	False			
Mouse · Spleen · 3′/5′ protocol comparison (2026 Diabetes)	Long-read protocol comparison using 3′ and 5′ single-cell capture	Tissue and method	GSE295352	SRR33259865	mouse	GSE295352:mouse	Published		ONT	n/a	2754	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Spleen · 3′/5′ protocol comparison (2026 Diabetes)	Long-read protocol comparison using 3′ and 5′ single-cell capture	Tissue and method	GSE295352	SRR33259866	mouse	GSE295352:mouse	Published		ONT	n/a	2647	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Spleen · 3′/5′ protocol comparison (2026 Diabetes)	Long-read protocol comparison using 3′ and 5′ single-cell capture	Tissue and method	GSE295352	SRR33259867	mouse	GSE295352:mouse	Published		ONT	3prime:v3	2828	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Spleen · 3′/5′ protocol comparison (2026 Diabetes)	Long-read protocol comparison using 3′ and 5′ single-cell capture	Tissue and method	GSE295352	SRR35432392	mouse	GSE295352:mouse	Published		ONT	n/a	3552	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Spleen · 3′/5′ protocol comparison (2026 Diabetes)	Long-read protocol comparison using 3′ and 5′ single-cell capture	Tissue and method	GSE295352	SRR35432393	mouse	GSE295352:mouse	Published		ONT	n/a	3839	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Spleen · 3′/5′ protocol comparison (2026 Diabetes)	Long-read protocol comparison using 3′ and 5′ single-cell capture	Tissue and method	GSE295352	SRR35432394	mouse	GSE295352:mouse	Published		ONT	3prime:v3	5124	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Testis · 11-week adult	Adult mouse testis long-read transcriptomes	Tissue atlas	GSA_mouse_testis_11week	CT	mouse	GSA_mouse_testis_11week:mouse	Unpublished		ONT	3prime:v3	23549	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)
Mouse · Testis · 11-week adult	Adult mouse testis long-read transcriptomes	Tissue atlas	GSA_mouse_testis_11week	MTECTRSCRNAONTR2	mouse	GSA_mouse_testis_11week:mouse	Unpublished		ONT	3prime:v3	16036	done	False	cell_resolved_droplet	barcode_resolved	ONT ONT cDNA reads -> IsoQuant (read_group tag:CB; genedb GENCODE vM33 (Ensembl 110) on GRCm39, 10x 2024-A genes.gtf -> isoquant genes.db)